Hb_000500_310

Information

Type -
Description -
Location Contig500: 213240-214843
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45759: 213298-214631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_310 0.0 - - -
2 Hb_004738_090 0.0954240102 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001140_160 0.1039149122 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_001780_060 0.1071888474 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
5 Hb_010098_080 0.1075172757 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
6 Hb_004545_150 0.1101432335 - - PREDICTED: paramyosin [Jatropha curcas]
7 Hb_002609_260 0.1109003275 - - CCCH-type zinc finger protein [Hevea brasiliensis]
8 Hb_003253_010 0.1197769652 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
9 Hb_000264_190 0.1220575908 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
10 Hb_003018_180 0.1237255588 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
11 Hb_002232_180 0.1284573884 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
12 Hb_011457_100 0.129476284 - - ATP binding protein, putative [Ricinus communis]
13 Hb_010931_100 0.1304474306 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
14 Hb_003906_120 0.1319263995 - - -
15 Hb_005488_100 0.132971388 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
16 Hb_000789_190 0.1331870755 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
17 Hb_002450_050 0.1333769226 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
18 Hb_178968_150 0.1368199565 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000472_040 0.1372032903 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
20 Hb_002067_160 0.1385625669 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_000500_310 Hb_000500_310 Hb_004738_090 Hb_004738_090 Hb_000500_310--Hb_004738_090 Hb_001140_160 Hb_001140_160 Hb_000500_310--Hb_001140_160 Hb_001780_060 Hb_001780_060 Hb_000500_310--Hb_001780_060 Hb_010098_080 Hb_010098_080 Hb_000500_310--Hb_010098_080 Hb_004545_150 Hb_004545_150 Hb_000500_310--Hb_004545_150 Hb_002609_260 Hb_002609_260 Hb_000500_310--Hb_002609_260 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_000957_040 Hb_000957_040 Hb_001140_160--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001140_160--Hb_000762_020 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_012347_010 Hb_012347_010 Hb_001140_160--Hb_012347_010 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_001780_060--Hb_004738_090 Hb_001780_060--Hb_004545_150 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_003253_010 Hb_003253_010 Hb_010098_080--Hb_003253_010 Hb_003777_070 Hb_003777_070 Hb_010098_080--Hb_003777_070 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_010098_080--Hb_002609_260 Hb_004545_150--Hb_010931_100 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_004545_150--Hb_000264_190 Hb_005488_100 Hb_005488_100 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
362.135 8.32903 5.85785 5.69098 163.33 130.271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.116 110.87 172.646 17.4619 10.2717

CAGE analysis