Hb_001140_160

Information

Type transcription factor
Description TF Family: MYB
Location Contig1140: 190509-198215
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13240g
description POPTRDRAFT_422546; hypothetical protein
nr
ID XP_012090267.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JEP1
description MYB family protein OS=Jatropha curcas GN=JCGZ_26118 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_160 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_000957_040 0.0759797198 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
3 Hb_000762_020 0.0903548605 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
4 Hb_004738_090 0.097409231 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003018_180 0.0994981364 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
6 Hb_012347_010 0.100497156 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
7 Hb_000500_310 0.1039149122 - - -
8 Hb_010872_060 0.1081724875 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
9 Hb_002027_300 0.1107788038 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
10 Hb_000264_190 0.1117680253 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
11 Hb_000130_390 0.1130163931 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
12 Hb_001017_090 0.1164921313 - - -
13 Hb_116349_150 0.1175556223 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_001315_020 0.1209695274 - - ring finger protein, putative [Ricinus communis]
15 Hb_178968_150 0.1209809168 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000997_260 0.1222996895 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
17 Hb_010931_100 0.1231938681 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_006120_200 0.1262834445 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
19 Hb_000563_540 0.1302516328 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
20 Hb_004545_150 0.1305715501 - - PREDICTED: paramyosin [Jatropha curcas]

Gene co-expression network

sample Hb_001140_160 Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_001140_160--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_012347_010 Hb_012347_010 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_010872_060 Hb_010872_060 Hb_000957_040--Hb_010872_060 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_000184_040 Hb_000184_040 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_003018_180--Hb_000130_390 Hb_003018_180--Hb_000957_040 Hb_002298_040 Hb_002298_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_001780_060 Hb_001780_060 Hb_003018_180--Hb_001780_060 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_000130_390 Hb_000500_310--Hb_004738_090 Hb_000500_310--Hb_001780_060 Hb_010098_080 Hb_010098_080 Hb_000500_310--Hb_010098_080 Hb_000500_310--Hb_004545_150 Hb_002609_260 Hb_002609_260 Hb_000500_310--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4454 0.508536 0.399965 1.19551 7.11552 9.50917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2119 6.87615 9.40787 0.667847 0.457496

CAGE analysis