Hb_002027_300

Information

Type -
Description -
Location Contig2027: 182901-185896
Sequence    

Annotation

kegg
ID rcu:RCOM_0556890
description gtpase activating protein, putative
nr
ID XP_012092348.1
description PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
swissprot
ID F4JI46
description Rho GTPase-activating protein 2 OS=Arabidopsis thaliana GN=ROPGAP2 PE=1 SV=1
trembl
ID A0A067JPU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22015 PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20717: 184721-185799
cDNA
(Sanger)
(ID:Location)		 013_M14.ab1: 182985-183689

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_300 0.0 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
2 Hb_012347_010 0.0605732258 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
3 Hb_000957_040 0.100277819 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_001315_020 0.1099016027 - - ring finger protein, putative [Ricinus communis]
5 Hb_001140_160 0.1107788038 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_006120_200 0.1178911668 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
7 Hb_010872_060 0.1206688009 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
8 Hb_055335_010 0.1231481424 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
9 Hb_000762_020 0.1270016421 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
10 Hb_124315_040 0.1353439976 - - hypothetical protein 19 [Hevea brasiliensis]
11 Hb_001141_470 0.1365209124 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
12 Hb_000130_390 0.1450829341 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
13 Hb_003018_180 0.1487768436 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
14 Hb_000548_040 0.1506614889 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
15 Hb_000500_310 0.1519647459 - - -
16 Hb_029584_140 0.1524285503 - - senescence-associated family protein [Populus trichocarpa]
17 Hb_006070_010 0.1542850806 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
18 Hb_012799_060 0.1582315426 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
19 Hb_017124_010 0.1626683192 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000707_080 0.1638851413 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]

Gene co-expression network

sample Hb_002027_300 Hb_002027_300 Hb_012347_010 Hb_012347_010 Hb_002027_300--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_002027_300--Hb_000957_040 Hb_001315_020 Hb_001315_020 Hb_002027_300--Hb_001315_020 Hb_001140_160 Hb_001140_160 Hb_002027_300--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_002027_300--Hb_006120_200 Hb_010872_060 Hb_010872_060 Hb_002027_300--Hb_010872_060 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060 Hb_055335_010 Hb_055335_010 Hb_001315_020--Hb_055335_010 Hb_001315_020--Hb_006120_200 Hb_006070_010 Hb_006070_010 Hb_001315_020--Hb_006070_010 Hb_001141_470 Hb_001141_470 Hb_001315_020--Hb_001141_470 Hb_001315_020--Hb_001140_160 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_006120_200--Hb_006070_010 Hb_006120_200--Hb_000957_040 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.818 4.68395 7.78866 8.19077 33.5894 35.6499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.6593 36.7602 76.1887 3.88931 1.38133

CAGE analysis