Hb_004705_030

Information

Type -
Description -
Location Contig4705: 71233-71799
Sequence    

Annotation

kegg
ID rcu:RCOM_1437990
description hypothetical protein
nr
ID XP_002512651.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IJK1
description Protein NETWORKED 2D OS=Arabidopsis thaliana GN=NET2D PE=3 SV=1
trembl
ID B9RFY2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027892_010 0.1361464776 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
3 Hb_000249_090 0.1449004094 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
4 Hb_000548_040 0.1662467331 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
5 Hb_012725_110 0.1695981064 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
6 Hb_000699_120 0.1782768611 - - DNA-binding family protein [Populus trichocarpa]
7 Hb_075449_050 0.1824904039 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
8 Hb_002243_080 0.1826428841 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
9 Hb_000002_390 0.183622677 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002027_300 0.1865844225 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
11 Hb_000120_650 0.1888165206 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
12 Hb_012347_010 0.1959216557 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
13 Hb_001141_470 0.1969216633 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
14 Hb_055335_010 0.1983349468 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
15 Hb_004048_050 0.1998467447 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
16 Hb_000077_410 0.2007326461 - - protein with unknown function [Ricinus communis]
17 Hb_002000_110 0.2008728424 - - ASR-like protein 2 [Hevea brasiliensis]
18 Hb_006018_030 0.2011647404 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
19 Hb_001315_020 0.2039759316 - - ring finger protein, putative [Ricinus communis]
20 Hb_010872_060 0.2047100071 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_004705_030 Hb_004705_030 Hb_027892_010 Hb_027892_010 Hb_004705_030--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_004705_030--Hb_000249_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_000699_120 Hb_000699_120 Hb_004705_030--Hb_000699_120 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_027892_010--Hb_000249_090 Hb_000120_650 Hb_000120_650 Hb_027892_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_027892_010--Hb_000120_120 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_013818_060 Hb_013818_060 Hb_027892_010--Hb_013818_060 Hb_000249_090--Hb_000120_650 Hb_000249_090--Hb_013818_060 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_000002_390 Hb_000002_390 Hb_000548_040--Hb_000002_390 Hb_001425_120 Hb_001425_120 Hb_000548_040--Hb_001425_120 Hb_002027_300 Hb_002027_300 Hb_000548_040--Hb_002027_300 Hb_012347_010 Hb_012347_010 Hb_000548_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000548_040--Hb_000957_040 Hb_000707_080 Hb_000707_080 Hb_000548_040--Hb_000707_080 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_000178_110 Hb_000178_110 Hb_000699_120--Hb_000178_110 Hb_000077_410 Hb_000077_410 Hb_000699_120--Hb_000077_410 Hb_113951_010 Hb_113951_010 Hb_000699_120--Hb_113951_010 Hb_000699_120--Hb_012725_110 Hb_000699_120--Hb_000836_500 Hb_002000_110 Hb_002000_110 Hb_075449_050--Hb_002000_110 Hb_000107_070 Hb_000107_070 Hb_075449_050--Hb_000107_070 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_002235_230 Hb_002235_230 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49254 0.063032 0.143499 0.225465 0.713168 1.51242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82795 2.00995 7.88706 0.791832 0

CAGE analysis