Hb_111648_010

Information

Type rubber biosynthesis
Description Gene Name: REF1
Location Contig111648: 2-1150
Sequence    

Annotation

kegg
ID rcu:RCOM_1433280
description Rubber elongation factor protein, putative
nr
ID AAR11448.1
description rubber elongation factor [Hevea brasiliensis]
swissprot
ID P15252
description Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2
trembl
ID Q6T708
description Rubber elongation factor OS=Hevea brasiliensis GN=REF PE=2 SV=1
Gene Ontology
ID GO:0003746
description rubber elongation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03525: 1-1151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111648_010 0.0 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
2 Hb_001514_180 0.0921270912 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
3 Hb_116264_010 0.0965646044 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
4 Hb_000041_070 0.1130948421 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
5 Hb_000078_010 0.1196517404 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
6 Hb_024505_040 0.1210279068 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
7 Hb_000444_030 0.1261120092 - - PREDICTED: expansin-A20 [Jatropha curcas]
8 Hb_145226_010 0.1262559238 - - PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera]
9 Hb_000032_220 0.130310572 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
10 Hb_007810_030 0.1309378194 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
11 Hb_099069_010 0.1310631102 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
12 Hb_001396_220 0.1311313099 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_003106_140 0.135624357 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001221_510 0.136150992 - - Protein HVA22, putative [Ricinus communis]
15 Hb_002387_060 0.1393141042 - - conserved hypothetical protein [Ricinus communis]
16 Hb_015934_020 0.1397975616 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
17 Hb_001741_080 0.1413412582 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
18 Hb_002352_010 0.1494612632 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_004206_030 0.1495239767 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_134789_010 0.1513583115 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_111648_010 Hb_111648_010 Hb_001514_180 Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_000078_010 Hb_000078_010 Hb_111648_010--Hb_000078_010 Hb_024505_040 Hb_024505_040 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_000041_070 Hb_001741_080 Hb_001741_080 Hb_001514_180--Hb_001741_080 Hb_060668_010 Hb_060668_010 Hb_001514_180--Hb_060668_010 Hb_001514_180--Hb_000444_030 Hb_001221_510 Hb_001221_510 Hb_116264_010--Hb_001221_510 Hb_004410_010 Hb_004410_010 Hb_116264_010--Hb_004410_010 Hb_002660_160 Hb_002660_160 Hb_116264_010--Hb_002660_160 Hb_000032_220 Hb_000032_220 Hb_116264_010--Hb_000032_220 Hb_002352_010 Hb_002352_010 Hb_116264_010--Hb_002352_010 Hb_000041_070--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_007810_030 Hb_007810_030 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_024505_040--Hb_000041_070 Hb_000442_030 Hb_000442_030 Hb_024505_040--Hb_000442_030 Hb_000444_030--Hb_001741_080 Hb_000184_180 Hb_000184_180 Hb_000444_030--Hb_000184_180 Hb_006816_440 Hb_006816_440 Hb_000444_030--Hb_006816_440 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4072.21 105.485 22.8029 823.308 2601.99 9362.71
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14155.5 8599.57 11529.3 1029.26 73.0696

CAGE analysis